| Pos. | Team | Bike | Riders | Diff. |
| 1 | MuSASHi RT HARC-PRO | Honda | Takahashi – Haslam – van der Mark | 214 Laps |
| 2 | Yoshimura Suzuki Racing | Suzuki | Tsuda – Aoki – Brookes | +1’51.996 |
| 3 | Team Kagayama | Suzuki | Kagayama – Schwantz – Haga | +1 Lap |
| 4 | Suzuki Endurance Racing | Suzuki | Philippe – Delhalle – Da Costa | +1 Lap |
| 5 | Yamaha France GMT94 Michelin | Yamaha | Checa – Foray – Lagrive | +2 Laps |
| 6 | Honda Team Asia | Honda | Kamaruzaman – Takahashi | +3 Laps |
| 7 | TOHO Racing with Moriwaki | Honda | Yamaguchi – Itoh – Watanabe | +4 Laps |
| 8 | Monster Energy Yamaha YART | Yamaha | Nakasuga – Parkes – Waters | +4 Laps |
| 9 | Honda Kunamoto Racing | Honda | Yoshida – Kojima – Tokudome | +6 Laps |
| 10 | Team RC2L | Suzuki | Buisson – Shinjo – Giabbani | +7 Laps |
| 11 | Bolliger Team Switzerland | Kawasaki | Saiger – Stamm – Sutter | +7 Laps |
| 12 | EVA RT Test Type-01 Trick Star | Kawasaki | Serizawa – Deguchi – Izutsu | +7 Laps |
| 13 | RS-Itoh & Asia | Kawasaki | Higashimura – Iwasaki – Murakami | +7 Laps |
| 14 | Honda Hamamatsu Escargot | Honda | Kuboyama – Nakatsuhara | +9 Laps |
| 15 | Confia H.M.F. LunaSol Japan | Suzuki | Suma – Hasegawa – Takamiya | +11 Laps |
| 16 | Team38 PS-K | Kawasaki | Karita – Keyes – Yamashita | +11 Laps |
| 17 | Team JP Dog Fight Yamaha | Yamaha | Fujita – Kimura – Tamura | +13 Laps |
| 18 | Honda Ryokuyoukai Kunamoto | Honda | Mitaori – Ohashi – Mori | +15 Laps |
| 19 | MotoMap Supply | Suzuki | Konno – Teramoto – Nakamoto | +15 Laps |
| 20 | Iwata Racing Family | Yamaha | Ueno – Sawamura – Nishimura | +15 Laps |
| 21 | Winner Z-Tech | Suzuki | Kunimatsu – Yoshida | +15 Laps |
| 22 | Honda TT Legends | Honda | McGuinness – Andrews – Rutter | +15 Laps |
| 23 | Hamamatsu Team Titan | Suzuki | Shimizu – Inijki – Ohshiro | +16 Laps |
| 24 | Dog Fish O-Tec Suzuka | Honda | Ohuchida – Akimoto – Watase | +16 Laps |
| 25 | RS Garage Harada Himeji | Kawasaki | Harada – Okamura – Tanaka | +16 Laps |
| 26 | Dog House & Higuchi | Suzuki | Higuchi – Iwatani | +16 Laps |
| 27 | Team Flembbo Leader Team | Kawasaki | Demarey – Nishijima – Prosenik | +17 Laps |
| 28 | B-Square Racing & Osaka SAM | Kawasaki | Tanaka – Ohita – Sato | +17 Laps |
| 29 | Honda Sayama Racing | Honda | Yamashita – Ishizuka – Ohyama | +19 Laps |
| 30 | Banner Racing H-K-C | Ducati | Kaneda – Dan – Asahina | +19 Laps |
| 31 | Motobox Kremer Racing | Suzuki | Scherrer – Paavilainen – Bauer | +19 Laps |
| 32 | SNDheater Human-Revo | Suzuki | Sagoh – Hisadumi | +19 Laps |
| 33 | La Bellezza Speed & Kumamon | Ducati | Itami – Hori – Toda | +19 Laps |
| 34 | Hamamatsu 8H Team | Yamaha | Tonari – Nakao – Izumi | +20 Laps |
| 35 | Yamashina Kawasaki | Kawasaki | Mizusawa – Yamasaki – Matsumoto | +22 Laps |
| 36 | Team Sugai Racing Japan | Ducati | Sugai – Kamatani | +22 Laps |
| 37 | Team Little Wing | BMW | Miyazaki – Yamauchi | +23 Laps |
| 38 | Honda Dream Takasaki | Honda | Shimizu – Sakurai – Kobayashi | +24 Laps |
| 39 | Hinoseiki Iwaki & T2 | Suzuki | Yamauchi – Wada – Takano | +25 Laps |
| 40 | Team Vital Spirit Shark | BMW | Saiki – Tsujimoto – Soma | +25 Laps |
| 41 | Team Karbar Cafe Racing | Kawasaki | Morimoto – Nakajima | +26 Laps |
| 42 | Motorrad Toyota Nagasaka | BMW | Noda – Nakamura – Sasaki | +26 Laps |
| 43 | Honda Kouyoukai Dream | Honda | Kurayama – Nakamura | +31 Laps |
| 44 | Honda Suzuka Racing Team | Honda | Yasuda – Hiura – Kitaguchi | +34 Laps |
| 45 | Team Etching Factory | Yamaha | Nakaoka – Hayashi – Fukami | +35 Laps |
| 46 | IMT satoracing | Yamaha | Sato – Inagaki – Yasutomi | +35 Laps |
| 47 | KTM Hamaguchi Bakuon Racing | KTM | Fujishima – Dairaku – Hamaguchi | +40 Laps |
| 48 | Honda Dream RT Sakurai | Honda | Stauffer – Hook | +48 Laps |
| 49 | Motobum & Ishigaki Island | Honda | Kunikawa – Ohki – Matsukawa | +50 Laps |
| 50 | Honda EG Racing | Honda | Kuribayashi – Honda | +51 Laps |